rs30158744 SNP Detail

Summary

• ID
  rs30158744
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:79649532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC ACCTGGAGCG CGCACCGCCT
  M
  GACCAGCTCC ATCACGATGC TCAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49606373	NES12961571	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	C		A	A	C	A		A
ss144782215	ENSMUSSNP1187826	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319808651	CHEV_1_79668390	CHEVERUD	SCREENING_POP	f	SNP							A					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30158744					SNP	A	C	A	A	A	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606373	NES12961571	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79649532 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ap1s3	adaptor-related protein complex AP-1, sigma 3			Intron
				Noncoding-Transcript-Variant
Cpgi464	CpG island 464			within coordinates
Rr396122	regulatory region 396122			234 bp downstream
Rr413837	regulatory region 413837			within coordinates
Rr413838	regulatory region 413838			147 bp proximal
Tssr12440	transcription start site region 12440			1648 bp upstream
Tssr12441	transcription start site region 12441			151 bp downstream
Tssr12442	transcription start site region 12442			269 bp downstream