rs30158000 SNP Detail

Summary

• ID
  rs30158000
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79650017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCTCCC CCTTTTACCC
  TTTCTCACTC CCTCCTCCTC CCCCTGGTTC TTCCTTTGCT CTCCTGCGCC ACGGGGACCC
  CGCAGTTCGC CACGCCCCTC ATCACCGCTA GCCCCACCCA GGGCAGTGCT TACACCTGCG
  CGCGCACCTT CTGCGCTGAC CGCGCCTGGT GCCCCAGCTT CCCTTTTGGT CTGGGGTCTG
  M
  GATCCTTCTT CTGCTGCCAC GTTGTGTGCT TCATGAATGG GACTGGCGAC CTTCCGCCAA
  AAGAAGATGC TTGCCTTTAC ACCTGAGAAA AGTGTAAAAA GCAGTCTGGC CCTACACCTC
  AGGGAGAGAG CAGTTCCCAG AGCTAGAAAT ACATGAAAAA TGTTTTCACA CACACTCCCT
  TGAGTTTTGT TTTGCTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49606369	NES12961524	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30158000					SNP	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606369	NES12961524	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79650017 () rs orientation: forward

Symbol	Name	Function Class
Ap1s3	adaptor-related protein complex AP-1, sigma 3	328 bp upstream
Cpgi464	CpG island 464	within coordinates
Rr396122	regulatory region 396122	719 bp downstream
Rr413837	regulatory region 413837	339 bp distal
Rr413838	regulatory region 413838	within coordinates
Tssr12441	transcription start site region 12441	307 bp upstream
Tssr12442	transcription start site region 12442	212 bp upstream