TCCAGCTCCC CCTTTTACCC TTTCTCACTC CCTCCTCCTC CCCCTGGTTC TTCCTTTGCT CTCCTGCGCC ACGGGGACCC CGCAGTTCGC CACGCCCCTC ATCACCGCTA GCCCCACCCA GGGCAGTGCT TACACCTGCG CGCGCACCTT CTGCGCTGAC CGCGCCTGGT GCCCCAGCTT CCCTTTTGGT CTGGGGTCTG M GATCCTTCTT CTGCTGCCAC GTTGTGTGCT TCATGAATGG GACTGGCGAC CTTCCGCCAA AAGAAGATGC TTGCCTTTAC ACCTGAGAAA AGTGTAAAAA GCAGTCTGGC CCTACACCTC AGGGAGAGAG CAGTTCCCAG AGCTAGAAAT ACATGAAAAA TGTTTTCACA CACACTCCCT TGAGTTTTGT TTTGCTTTTT M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49606369 | NES12961524 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | A | C | C | A | C |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30158000 | SNP | C | C | C | C | C | C | C | C | A | C | C | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49606369 | NES12961524 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr1:79650017 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ap1s3 | adaptor-related protein complex AP-1, sigma 3 | 328 bp upstream | ||||||
Cpgi464 | CpG island 464 | within coordinates | ||||||
Rr396122 | regulatory region 396122 | 719 bp downstream | ||||||
Rr413837 | regulatory region 413837 | 339 bp distal | ||||||
Rr413838 | regulatory region 413838 | within coordinates | ||||||
Tssr12441 | transcription start site region 12441 | 307 bp upstream | ||||||
Tssr12442 | transcription start site region 12442 | 212 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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