rs30142180 SNP Detail

Summary

• ID
  rs30142180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65286774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGTTGT TGTTGTTTTT
  AGAGACAACC TACTCCACGA AATAGTCTCT GATCTTCATG TATACATGAT GACACACTTG
  CCCTGCTACC CCAATTTTCT CTACCTCAGC TATTGTGCAT GTGTCCGAGT ATCTACCCGC
  ACAATAATAT AAAATTAAAA TTAAATAAAA TGAAAGACCC GCCCAATCTC CTATTAACTA
  Y
  CCTAAGACTT CAAAATAGGT GGGAAATAAA CGATATGCTG GTATTCTTCA TACATGCACA
  CGTGTACATT CATACAAATC CTTCCTAACA TAATGCCTGG TAGGAAGGCC CAGCAGGCAC
  ACAGCAGCAC ACTAGGGCAG GGACGGACTG TTCCTTCCTG TAACTGTGCT ACGCCTGTCA
  CTGTCTCAGA CATCTGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49602600	NES12889713	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30142180					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49602600	NES12889713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65286774 () rs orientation: forward

Symbol	Name	Function Class
Kcnab1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	1131 bp downstream
Rr577674	regulatory region 577674	748 bp proximal
Rr577675	regulatory region 577675	977 bp proximal
Ssr3	signal sequence receptor, gamma	304 bp downstream
Tssr33458	transcription start site region 33458	954 bp downstream
Tssr33459	transcription start site region 33459	1429 bp downstream
Tssr33460	transcription start site region 33460	1578 bp downstream
Tssr33461	transcription start site region 33461	1687 bp downstream
Tssr33462	transcription start site region 33462	1923 bp downstream