rs30142179 SNP Detail

Summary

• ID
  rs30142179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65286958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTCCTAT TAACTACCCT
  AAGACTTCAA AATAGGTGGG AAATAAACGA TATGCTGGTA TTCTTCATAC ATGCACACGT
  GTACATTCAT ACAAATCCTT CCTAACATAA TGCCTGGTAG GAAGGCCCAG CAGGCACACA
  GCAGCACACT AGGGCAGGGA CGGACTGTTC CTTCCTGTAA CTGTGCTACG CCTGTCACTG
  Y
  CTCAGACATC TGGCCAGAGA CTTCAACAGG GCACTTACAC GTGTAGGAAA GAGGTCTAAT
  ATAAAGTGTG TAATAAATAC TCTTATGGTT CACATAAAGA ATTACAGAAA AACAAAACAC
  ATTTTTAAAA ACAAAGTTTA ATCATACTTA TTAATAACAA GACTTTTTTT AAAATGCAGA
  GTATAAATTC CACTTCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49602599	NES12889714	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30142179					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49602599	NES12889714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65286958 () rs orientation: forward

Symbol	Name	Function Class
Kcnab1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	1315 bp downstream
Rr577674	regulatory region 577674	564 bp proximal
Rr577675	regulatory region 577675	793 bp proximal
Ssr3	signal sequence receptor, gamma	120 bp downstream
Tssr33458	transcription start site region 33458	770 bp downstream
Tssr33459	transcription start site region 33459	1245 bp downstream
Tssr33460	transcription start site region 33460	1394 bp downstream
Tssr33461	transcription start site region 33461	1503 bp downstream
Tssr33462	transcription start site region 33462	1739 bp downstream
Tssr33463	transcription start site region 33463	1859 bp downstream