rs30118194 SNP Detail

Summary

• ID
  rs30118194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAGGCGTGC ACCACCACAC CCAGCCCCAA CTCTGTTTTT GTCATGCATT AGAAAAGTGC
  AGTGATTGGC AGGTTTAATT AAATCTTTAA GCATATGTAG TAAAGTCACT GGATTCAGCA
  AGTCAAGGGC TGTGGTTGAC CATTTGTGTA TTCATGCTTA AATTTGTGCT GGGGTATCAG
  GATCTCTTGG CTGACAGCCC ATTTCAGCCA TGTAGAGATG AAAGTCAGTT CTCAGTAGAA
  AATTTTACAA AACATAAAAA CATAAAGGAT TAGTATATTC ATTCAGATAA GGACAGTGGA
  R
  ACAGCACCCA ATGATCTATG TTATTGATTT AGTATTTTTT CATTTTATGT GTATGTACAT
  AAGGTACACA CACATAAATA TATATACATG CATATATTTG TCGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTATGCAC ATGGATGTGG AAGGTAGAGT
  TTGATGTCAG GAACATTCCT CATTTCTCTT CCACTTTCAT TCTTTAAGGA AAAGTCCCCC
  AATCAAAGCC AAAGCTTGCT CGATATGGCT AGTTTGCTGT CTAACTTGCT CTGAGGATTC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45894568	mCV23761530	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30118194					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562905 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			745 bp downstream
Tssr56047	transcription start site region 56047			596 bp downstream
Tssr56048	transcription start site region 56048			within coordinates
Tssr56049	transcription start site region 56049			39 bp upstream
Tssr60620	transcription start site region 60620			218 bp upstream
Tssr60621	transcription start site region 60621			198 bp upstream
Tssr60622	transcription start site region 60622			139 bp upstream
Tssr60623	transcription start site region 60623			90 bp upstream
Tssr60624	transcription start site region 60624			63 bp upstream
Tssr60625	transcription start site region 60625			within coordinates
Tssr60626	transcription start site region 60626			14 bp downstream
Tssr60627	transcription start site region 60627			30 bp downstream
Tssr60628	transcription start site region 60628			174 bp downstream
Tssr60629	transcription start site region 60629			229 bp downstream
Tssr60630	transcription start site region 60630			298 bp downstream
Tssr60631	transcription start site region 60631			342 bp downstream
Tssr60632	transcription start site region 60632			394 bp downstream
Tssr60633	transcription start site region 60633			420 bp downstream
Tssr60634	transcription start site region 60634			433 bp downstream
Tssr60635	transcription start site region 60635			499 bp downstream
Tssr60636	transcription start site region 60636			604 bp downstream
Tssr60637	transcription start site region 60637			860 bp downstream
Tssr60638	transcription start site region 60638			900 bp downstream
Tssr60639	transcription start site region 60639			951 bp downstream
Tssr60640	transcription start site region 60640			1206 bp downstream