rs30110412 SNP Detail

Summary

• ID
  rs30110412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17079233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGCATTGGA AATGTAAATG AGTTAAATAC CTAATAAAAA ATGGAAAAAA AAAAAAAGAA
  CAGAGAGCTT GCACAATGGT AGGCATATGG GTGTATAAAA TAGGTATACA AAATAAACCT
  ACTGACAACA GGCCATCAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA GAATGGAGCA
  TAGCTTCGGG ACATGGGAGT GGCCCCTCTA ATCACTTAAC TTTAGTTTCT TTTTTTGTTC
  CACCAAGGTA AAGAGAGATT GAATTAGCAT GCAACTGAAA TTTGATAGTA GCTGTAAGTA
  R
  AGTGTATATG CATGCTTGGA AAGTGACCCG ATGTTCCTGA ACCATTAAGC AAATGTGAAT
  GCTGGCCCTG TGTCTTCTTT CATGGAGAAC TTCTCCTGTA ATAGGAAGTC TGTAAATACA
  GAACACAGTG AACCAAACCC TCCTCTCCTT CCTTTTCCTC TCCAGCTTGG CTCCCTCCCC
  ACCACCGAGT CATGCCCCTA AGGACTTTTC TAACCCAGCA GGTCAGATAG CAGCTCTAAA
  TCAGTTAAGG CACACCATAT AAATGTATTA GGTTTTGATT TGTTTTGTTG TCCGGATCAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45894336	mCV24739113	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30110412					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17079233 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626760	regulatory region 626760			1256 bp distal
Rr626761	regulatory region 626761			within coordinates
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant