rs30109590 SNP Detail

Summary

• ID
  rs30109590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79051229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA AATTAAAACT AACTCCTATA
  Y
  CATAATGTAC AGGTCTAGGA TATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45396152	mCV25348403	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss135368220	ENSMUSSNP4519923	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss320810210	CHEV_3_78947844	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30109590					SNP	C	C	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79051229 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			217 bp proximal
Rr578467	regulatory region 578467			1045 bp proximal
Rr578468	regulatory region 578468			1943 bp proximal
Tssr33630	transcription start site region 33630			956 bp upstream
Tssr33631	transcription start site region 33631			484 bp downstream
Tssr33632	transcription start site region 33632			1990 bp downstream