rs30109244 SNP Detail

Summary

• ID
  rs30109244
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123177827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCTTAAA CCCAGTAATG TCAACTGTAA GTGGCCGCTG
  GAGGAATTCT GTCGAATGCA ATAAATGTAG ACAAAGGCTG AGCTGAATAG AGCCGATTCA
  S
  AGAAAACCTT CCAAGTCAGA CTGAGGACAC AGGAGGAACG CTGCAGTATT AGGTACAAAC
  ACGGCATAAG AAAATCTGCA GTTAGTGGTC GCTTTAGCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45396330	mCV23482960	ABI	CRAMUS_MOUSE	f	SNP		C	G			C		G
ss51023312	NES13907591	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C		C	G	C	C		G	C	C	G		C
ss135764275	ENSMUSSNP5381029	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G					G
ss320919461	CHEV_3_123087096	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30109244					SNP	C	C	G	C	C	C	C	G	C	C	C	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023312	NES13907591	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123177827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	1548 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	1574 bp upstream
Rr584510	regulatory region 584510	1006 bp proximal
Rr584511	regulatory region 584511	1743 bp proximal
Tssr35499	transcription start site region 35499	1490 bp downstream
Tssr35500	transcription start site region 35500	1747 bp downstream
Tssr35501	transcription start site region 35501	1816 bp downstream