rs30105963 SNP Detail

Summary

• ID
  rs30105963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79054633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAT TATTATTTGG CCTTTAACCC
  Y
  GCCCCCCAAA AAAGCCAACA GTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45394175	mCV25348368	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss135368244	ENSMUSSNP6506953	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320810214	CHEV_3_78951248	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30105963					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79054633 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				Noncoding-Transcript-Variant
Rr578467	regulatory region 578467			1859 bp distal
Rr578468	regulatory region 578468			961 bp distal
Tssr33632	transcription start site region 33632			1396 bp upstream
Tssr33633	transcription start site region 33633			175 bp downstream