rs30091738 SNP Detail

Summary

• ID
  rs30091738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51294060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT TGAAGACTTG ACACTGAATC
  R
  CATCAGAGAC AAATACAAAG TATCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49598286	NES12918525	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	A	G	A	G		A	G	A		A
ss135173155	ENSMUSSNP2881865	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss320762585	CHEV_3_51190561	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30091738					SNP	A	A	G	G	G	G	A	G	A	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598286	NES12918525	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51294060 () rs orientation: forward

Symbol	Name	Function Class
Gm5103	predicted gene 5103	315 bp downstream
Mgarp	mitochondria localized glutamic acid rich protein	1773 bp downstream
Rr576306	regulatory region 576306	238 bp proximal
Rr576307	regulatory region 576307	1317 bp proximal