rs30072246 SNP Detail

Summary

• ID
  rs30072246
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4902138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTG AGAGGGTTAC ACGATCTTGC
  W
  GCTTTTTCTA TGCACACACA CAATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45891853	mCV24927524	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A	T
ss132934026	ENSMUSSNP4249608	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss321728233	CHEV_6_4852138	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30072246					SNP	T	T	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4902138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17128	CpG island 17128	597 bp proximal
Ppp1r9a	protein phosphatase 1, regulatory subunit 9A	779 bp upstream
Rr626066	regulatory region 626066	346 bp proximal
Rr626067	regulatory region 626067	1246 bp proximal
Tssr54840	transcription start site region 54840	775 bp upstream
Tssr54841	transcription start site region 54841	919 bp upstream
Tssr54842	transcription start site region 54842	1112 bp upstream
Tssr54843	transcription start site region 54843	1160 bp upstream
Tssr54844	transcription start site region 54844	1212 bp upstream
Tssr59733	transcription start site region 59733	1779 bp downstream