rs30070152 SNP Detail

Summary

• ID
  rs30070152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52659953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGAGGAC TCGGAGAAAC
  AGTCTTTTGA TTAAACCTCC CAACACTTCT GATTTGGCTC TCAAGCCTTT ATGGGGCAAT
  TAGTATTCCG TACATTAAAA ATAGGACTTG ATGGATGGCT TCTCTCCTAA TGCAGGATTA
  ATGAACAATC TGGGAGTTCT TTTGGGGAAG GACGGAAGAC ATAGGAAAAG TTTGTTACTC
  R
  AGAGACTTCC TTAGCTTTTG TATAGATATG AGTAAGCTTA TTAAAGCTGG GGGCGGGGCT
  GGGATTAGGT GGCTGGGCCC TGAGGACTAT GACAAATGTC AGGACTTTTG GAGTAAATCT
  CTGCATCAGA GGAAAGGCAG ATGAAGCACC ATCTAGGTGA CACTGGGCAG TCTAGGTACA
  CTGTGGGAAC CACTGAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45392860	mCV23179591	ABI	CRAMUS_MOUSE	f	SNP		A						G	G
ss46930994	NES10797886	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	G	A		A	A	A	A		A
ss135178158	ENSMUSSNP2398860	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss320765042	CHEV_3_52556454	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30070152					SNP	A	A	A	A	A	A	A	G	G	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930994	NES10797886	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52659953 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1916 bp proximal