rs30054578 SNP Detail

Summary

• ID
  rs30054578
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87823791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC ATGCAAGAAC AGCAACTGAT
  S
  TGTTGAGCCT TTTAACCAGC AAATA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45390011	mCV23484503	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss135468762	ENSMUSSNP2537744	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss320835501	CHEV_3_87720406	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30054578					SNP	C	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87823791 () rs orientation: forward

Symbol	Name	Function Class
Gm64606	predicted gene, 64606	1941 bp downstream
Hdgf	heparin binding growth factor	352 bp downstream
Rr579572	regulatory region 579572	695 bp proximal
Tssr29850	transcription start site region 29850	1539 bp downstream
Tssr29851	transcription start site region 29851	1404 bp downstream
Tssr29852	transcription start site region 29852	1389 bp downstream
Tssr29853	transcription start site region 29853	1301 bp downstream
Tssr29854	transcription start site region 29854	1157 bp downstream
Tssr29855	transcription start site region 29855	972 bp downstream
Tssr29856	transcription start site region 29856	936 bp downstream
Tssr29857	transcription start site region 29857	912 bp downstream
Tssr29858	transcription start site region 29858	881 bp downstream
Tssr29859	transcription start site region 29859	849 bp downstream
Tssr29860	transcription start site region 29860	701 bp downstream
Tssr29861	transcription start site region 29861	679 bp downstream