rs30022019 SNP Detail

Summary

• ID
  rs30022019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138448983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGC ACCATCTCCG GCTTTGTGTA
  R
  GATGCAGATG CCGTGGTGTG TGGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45387878	mCV23172534	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss135956721	ENSMUSSNP2133462	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
ss320981114	CHEV_3_138406186	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30022019					SNP	A	A	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138448983 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13879	CpG island 13879			within coordinates
Rr367566	regulatory region 367566			within coordinates
Rr586188	regulatory region 586188			1017 bp distal
Rr586189	regulatory region 586189			within coordinates
Rr586190	regulatory region 586190			869 bp distal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr32003	transcription start site region 32003			900 bp downstream
Tssr32004	transcription start site region 32004			890 bp downstream
Tssr32005	transcription start site region 32005			1045 bp upstream