rs30020910 SNP Detail

Summary

• ID
  rs30020910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTAATAGCT TGTCAACTTT TATTTACAGA GTCCCATATG TGTGAAGATA ATGCTAATAC
  AAGACAATTT TACACTCATA TGATTCATAG ATGCCATGAT TTTAAAAAGA AACTCTTTCC
  CAACTCTGTT TTTTGTTTTG TTTTTTTTTT TGTTTTTTTT TGTTTTTTTT TTTTGTTGTT
  GTTGTTTCTG TTTTTTTTTT TTTTTTTTTT TTCAAGACAG GGTTTCTCTG TGTAGCCCTG
  ACTGTCCTGG AACTCACTCT GTAGACCAGG CTGGCCTTGA ACTCAGAAAT TTGCCTGCCT
  Y
  TGCCTCCCAA GTGCTGGGAT TAAAGGCGTG CACCACCACA CCCAGCCCCA ACTCTGTTTT
  TGTCATGCAT TAGAAAAGTG CAGTGATTGG CAGGTTTAAT TAAATCTTTA AGCATATGTA
  GTAAAGTCAC TGGATTCAGC AAGTCAAGGG CTGTGGTTGA CCATTTGTGT ATTCATGCTT
  AAATTTGTGC TGGGGTATCA GGATCTCTTG GCTGACAGCC CATTTCAGCC ATGTAGAGAT
  GAAAGTCAGT TCTCAGTAGA AAATTTTACA AAACATAAAA ACATAAAGGA TTAGTATATT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45886242	mCV23761539	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30020910					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562583 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr629347	regulatory region 629347			1842 bp distal
Rr629348	regulatory region 629348			1941 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			423 bp downstream
Tssr56047	transcription start site region 56047			274 bp downstream
Tssr56048	transcription start site region 56048			311 bp upstream
Tssr56049	transcription start site region 56049			361 bp upstream
Tssr60620	transcription start site region 60620			91 bp downstream
Tssr60621	transcription start site region 60621			109 bp downstream
Tssr60622	transcription start site region 60622			155 bp downstream
Tssr60623	transcription start site region 60623			211 bp downstream
Tssr60624	transcription start site region 60624			253 bp downstream
Tssr60625	transcription start site region 60625			321 bp downstream
Tssr60626	transcription start site region 60626			336 bp downstream
Tssr60627	transcription start site region 60627			352 bp downstream
Tssr60628	transcription start site region 60628			496 bp downstream
Tssr60629	transcription start site region 60629			551 bp downstream
Tssr60630	transcription start site region 60630			620 bp downstream
Tssr60631	transcription start site region 60631			664 bp downstream
Tssr60632	transcription start site region 60632			716 bp downstream
Tssr60633	transcription start site region 60633			742 bp downstream
Tssr60634	transcription start site region 60634			755 bp downstream
Tssr60635	transcription start site region 60635			821 bp downstream
Tssr60636	transcription start site region 60636			926 bp downstream
Tssr60637	transcription start site region 60637			1182 bp downstream
Tssr60638	transcription start site region 60638			1222 bp downstream
Tssr60639	transcription start site region 60639			1273 bp downstream
Tssr60640	transcription start site region 60640			1528 bp downstream