rs30017669 SNP Detail

Summary

• ID
  rs30017669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81964343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC AGGAGCCCTG TGCTGCCCAG
  Y
  GAGTCTTTGT TTCTAGCTCA GAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss45886014	mCV23926372	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	T
ss51347835	NES13740465	PERLEGEN	MM_PANEL2	f	SNP						C		T
ss133338829	ENSMUSSNP617143	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
ss321840807	CHEV_6_81937356	CHEVERUD	SCREENING_POP	f	SNP							C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs30017669					SNP	C	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51347835	NES13740465	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81964343 () rs orientation: forward

Symbol	Name	Function Class
Gm20383	predicted gene, 20383	within coordinates
Gm44202	predicted gene, 44202	587 bp upstream
Rr632571	regulatory region 632571	104 bp distal
Rr632572	regulatory region 632572	184 bp distal
Rr632573	regulatory region 632573	214 bp proximal