GAACT GCAAATCGAG CACTCGTTCC S GAGCTAGCGA AGGCGGATGT GACGT S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
DBA/2J |
LG/J |
MOLF/EiJ |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45385882 | mCV25061966 | ABI | CRAMUS_MOUSE | f | SNP | C | C | G | |||||||
ss46778177 | NES10734333 | PERLEGEN | MM_PANEL2 | f | SNP | C | G | G | G | G | C | ||||
ss135513188 | ENSMUSSNP3911624 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | C | G | |||||||
ss320841249 | CHEV_3_95754973 | CHEVERUD | SCREENING_POP | f | SNP | G | C | ||||||||
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
DBA/2J |
LG/J |
MOLF/EiJ |
SM/J |
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rs30014794 | SNP | C | C | C | G | G | G | G | G | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46778177 | NES10734333 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr3:95858362 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13530 | CpG island 13530 | within coordinates | ||||||
Gm56819 | predicted gene, 56819 | within coordinates | ||||||
Gm65572 | predicted gene, 65572 | 278 bp upstream | ||||||
Rr375411 | regulatory region 375411 | within coordinates | ||||||
Rr581095 | regulatory region 581095 | within coordinates | ||||||
Rr581096 | regulatory region 581096 | 231 bp proximal | ||||||
Rr581097 | regulatory region 581097 | 289 bp proximal | ||||||
Tssr30663 | transcription start site region 30663 | 8 bp upstream | ||||||
Tssr30664 | transcription start site region 30664 | 257 bp upstream | ||||||
Tssr34570 | transcription start site region 34570 | 14 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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