rs30000994 SNP Detail

Summary

• ID
  rs30000994
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87417391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG ACTGAGAAAC TTCCTTTCAC
  M
  GTATAGAAGC CTAGCTCCAT CTCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45384585	mCV22946004	ABI	CRAMUS_MOUSE	f	SNP	C	A		A
ss51577796	NES14674303	PERLEGEN	MM_PANEL2	f	SNP			C		C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30000994					SNP	C	A	C	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577796	NES14674303	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87417391 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397760	regulatory region 397760	1547 bp downstream
Rr579501	regulatory region 579501	1569 bp distal
Rr579502	regulatory region 579502	1726 bp distal
Rr579503	regulatory region 579503	1660 bp distal
Rr579504	regulatory region 579504	646 bp distal
Rr579505	regulatory region 579505	930 bp distal
Rr579506	regulatory region 579506	900 bp distal
Rr579507	regulatory region 579507	339 bp distal
Rr579508	regulatory region 579508	1924 bp proximal