rs29977184 SNP Detail

Summary

• ID
  rs29977184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90414796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT TTTTGTATTG GACCCCAGGG
  Y
  CAATTTAAGT AATGTTTTCT TAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45383560	mCV23476244	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss320837919	CHEV_3_90311411	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29977184					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90414796 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chtop	chromatin target of PRMT1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13465	CpG island 13465			1272 bp proximal
Gm56783	predicted gene, 56783			1475 bp upstream
Rr397813	regulatory region 397813			1887 bp upstream
Rr580380	regulatory region 580380			1967 bp distal
Rr580381	regulatory region 580381			985 bp proximal
Rr580382	regulatory region 580382			1413 bp proximal
Rr580383	regulatory region 580383			1951 bp proximal
Tssr30207	transcription start site region 30207			1588 bp upstream
Tssr34235	transcription start site region 34235			1108 bp upstream
Tssr34236	transcription start site region 34236			570 bp downstream
Tssr34237	transcription start site region 34237			1238 bp downstream
Tssr34238	transcription start site region 34238			1967 bp downstream