rs29971163 SNP Detail

Summary

• ID
  rs29971163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119393415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAG GCGTGCGCCA CCACGCCCGG
  Y
  GCCACCTGGT TTCTAAGAGA GCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss45881446	mCV22293922	ABI	CRAMUS_MOUSE	f	SNP		C	T			C
ss48075667	NES11872181	PERLEGEN	MM_PANEL2	f	SNP	C			T	T		C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs29971163					SNP	C	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075667	NES11872181	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119393415 () rs orientation: forward

Symbol	Name	Function Class
Adipor2	adiponectin receptor 2	Intron
Rr379997	regulatory region 379997	1979 bp upstream
Rr637669	regulatory region 637669	1313 bp distal
Rr637670	regulatory region 637670	824 bp proximal
Rr637671	regulatory region 637671	1240 bp proximal
Rr637672	regulatory region 637672	1922 bp proximal
Tssr62716	transcription start site region 62716	1025 bp downstream
Tssr62717	transcription start site region 62717	1093 bp downstream
Tssr62718	transcription start site region 62718	1145 bp downstream
Tssr62719	transcription start site region 62719	1224 bp downstream