rs29970542 SNP Detail

Summary

• ID
  rs29970542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168010613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAATTG ATCCAGGGCT
  GTGAGTGGAT TGCCAGCAGT TGGCATGGAC CCTGGAGACC TCAGCCAGGC CTATGAGAGG
  GCTGCAGGGT GGTCGATGCT GGGGTCAGCA AGGCGTTGAC CTGGGCTTCT TGCTTCTCAT
  CAGAATATGG GATTGCAGTG GTTAACCAGG GGCCTCTGGG CAGAGGACAT TCAGGCCTAA
  R
  CCTAGTTGGC AAGGCAGCCT CCCCCACCCC TCCATCTGGC AGCCATGGCT GGGACCCACA
  ATGCAGTGCT CTCTAGTCTG GAAGTGGGGG GTGAGGGTGG GGCCATCTCT TTAGGACAAA
  GCTCTGGGGC CCAGTCTGGC CCAACACTGT TCTTGTACAT AAAGTTTTAG AGGGATACAG
  CCATACTTTT TGAAGACAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45382549	mCV22944604	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss148267288	ENSMUSSNP3060194	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs29970542					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168010613 () rs orientation: forward

Symbol	Name	Function Class
Gm52960	predicted gene, 52960	within coordinates
Gm54130	predicted gene, 54130	within coordinates
Rr570912	regulatory region 570912	1234 bp distal
Rr570913	regulatory region 570913	within coordinates
Rr570914	regulatory region 570914	528 bp proximal
Rr570915	regulatory region 570915	1029 bp proximal