rs29957156 SNP Detail

Summary

• ID
  rs29957156
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120807362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAG TGCCACAATA CCATAACAAG
  W
  ACATATAAAA TCAGATTAAG GAAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss45380108	mCV22579031	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss147374595	ENSMUSSNP1544349	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320480953	CHEV_2_120802617	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs29957156					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120807362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	61 bp proximal
Gm55820	predicted gene, 55820	770 bp downstream
Rr397244	regulatory region 397244	1696 bp upstream
Rr563749	regulatory region 563749	879 bp distal
Rr563750	regulatory region 563750	656 bp distal
Rr563751	regulatory region 563751	345 bp distal
Rr563752	regulatory region 563752	within coordinates
Rr563753	regulatory region 563753	156 bp proximal
Rr563754	regulatory region 563754	162 bp proximal
Rr563755	regulatory region 563755	228 bp proximal
Rr563756	regulatory region 563756	610 bp proximal
Rr563757	regulatory region 563757	1869 bp proximal
Tmem62	transmembrane protein 62	Noncoding-Transcript-Variant
Tssr19722	transcription start site region 19722	200 bp upstream
Tssr19723	transcription start site region 19723	267 bp upstream
Tssr19724	transcription start site region 19724	367 bp upstream