rs29927703 SNP Detail

Summary

• ID
  rs29927703
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156816146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTCAAGG AGAATATGAA
  ATAACTAAAG AAGAAGGGAA TTAAATTCCA GCTATTTCTT GGCAGCCTTG TTTTAAAAAC
  AAGGGCTACT TCTCACTTCT TAAAATAGTG TGCTTCAAAC TTTAACGTAC ACTCCCCTGG
  GGCTTTTATC AGTTTTAAGG GATAACGGCT GAGCATGTGA TCCATCACTA AGGATCAGGA
  W
  CCTCTGAGAT GAGAGAGTGA TCACTGACAG CATTAATAGA GCTAGAGCTC TATTAGTTCA
  TCCTGCCATC TCCCCAAAAA GAATACATCC AGTGTTTTTT ATATAATAAA CTACATGGAT
  CTTAAAAAAG ACTCAACAGG CCAGATCAAC CAGGAGAATA TACCAGACAG AAGAGAGTGA
  GTCTGAGAGT CACTGAGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45378695	mCV22553675	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss148088697	ENSMUSSNP3261919	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29927703					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156816146 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568396	regulatory region 568396			994 bp distal
Rr568397	regulatory region 568397			546 bp proximal