rs29925404 SNP Detail

Summary

• ID
  rs29925404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65174707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAA GGGAAAACCC TTGTGTAGTA
  R
  AAGATACATG ATTTAAGTAG AGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39630620	mCV25191719	ABI	CRAMUS_MOUSE	f	SNP		G	A					G	G
ss50435880	NES13449539	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A		A	G		A
ss147305472	ENSMUSSNP3985950	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss325655594	CHEV_18_65201290	CHEVERUD	SCREENING_POP	f	SNP												G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29925404					SNP	G	G	A	A	A	A	A	G	G	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50435880	NES13449539	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65174707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41756	predicted gene, 41756			within coordinates
Gm56499	predicted gene, 56499			930 bp upstream
Nedd4l	neural precursor cell expressed, developmentally down-regulated gene 4-like			Intron
				Noncoding-Transcript-Variant
Rr539431	regulatory region 539431			941 bp distal
Rr539432	regulatory region 539432			750 bp distal
Rr539433	regulatory region 539433			1226 bp proximal
Rr539434	regulatory region 539434			1867 bp proximal
Tssr153684	transcription start site region 153684			926 bp upstream
Tssr153685	transcription start site region 153685			895 bp upstream