rs29922581 SNP Detail

Summary

• ID
  rs29922581
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108806138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCGGCGC CTTCCCGCCG CAGCTGCGTG CCCAGATGCG
  CGACCTGGCG CGGGGCATGT TCGTCTTCGG CTATGACAAC TACATGGCGC ACGCCTTTCC
  K
  CAGGACGAGC TCAACCCCAT CTACTGCCGC GGCCGGGGGC CTGACCGCGG AGACCCGTGA
  GTAGCCCGCG CGCTGCCTTC CGCCCCTCCG GGTCCCTGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45877713	mCV24063202	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss133510097	ENSMUSSNP172023	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs29922581					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108806138 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17816	CpG island 17816			within coordinates
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417			901 bp upstream
Rr399822	regulatory region 399822			1393 bp downstream
Rr399823	regulatory region 399823			540 bp downstream
Rr636213	regulatory region 636213			834 bp distal
Rr636214	regulatory region 636214			493 bp distal
Rr636215	regulatory region 636215			7 bp distal
Tssr58099	transcription start site region 58099			660 bp downstream
Tssr58100	transcription start site region 58100			635 bp downstream
Tssr58101	transcription start site region 58101			619 bp downstream
Tssr58102	transcription start site region 58102			612 bp downstream
Tssr58103	transcription start site region 58103			573 bp downstream
Tssr58104	transcription start site region 58104			561 bp downstream
Tssr58105	transcription start site region 58105			456 bp downstream
Tssr58106	transcription start site region 58106			433 bp downstream
Tssr58107	transcription start site region 58107			33 bp downstream
Tssr62395	transcription start site region 62395			793 bp upstream