rs29918597 SNP Detail

Summary

• ID
  rs29918597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132444259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCAAAGTTA CCTCTTTCCA AAGAATATAG AATTTCACCT ATTACATAAA GAGTGTTCTT
  TCCTTGATCC AACTTTCCCT TCCTGGATTA GTTTATATTT CCCAGACTTC AGGAACATGA
  AAGAGGTCTG TAATCAAACT GCCCTGTTTC TTCACAACTG CTTTCAGCAG CATAAAGGAG
  AGCCAGCCGA AGCTGCTCTT TGAATGGCAC GATACAGACT GCTCTAAATG ACCAAAATAA
  ACTAAAAAAA ATACATGCAT GTGTGCATGT GTATATGTGT GTGCATGTGG TGTGTGTGTG
  Y
  GTGTGTGTGT GTGTGTGTGT GTGAAGGCTA CATATCTTGT ATACATTCTG TTTCCTGCTT
  TCTGGAAACA AAAATCTTAA GGCTTAAAGC TGGATTCAAA GTATCTAAAT TCAGAGTAAA
  TGGCAAGCAG TCAAATTCTG CATGGGCTAC TCAGTACTCT TGAAATTCAC CAGGCAGCTT
  CTCCAGTAAT ACAATAGCAA TAATGGTGTT TACTGCACAG GCCTGTTAGG ATCTCCAGTG
  AATTCACACT TGACACAAAG CACACATATA ACTTATAACT AAAGTTACCA TGGAACTTAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45378489	mCV25295382	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29918597					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132444259 () rs orientation: forward

Symbol	Name	Function Class
AU019990	expressed sequence AU019990	within coordinates
Gm75202	predicted gene, 75202	1169 bp upstream
Rr565501	regulatory region 565501	1749 bp distal
Rr565502	regulatory region 565502	73 bp distal
Tssr26480	transcription start site region 26480	1168 bp upstream