rs29906005 SNP Detail

Summary

• ID
  rs29906005
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167960458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAACACAAAG TAGATCTAAA ACTAGAGACT CCAGCTGTGG CGGGCGGTCT GTCTAGGTGT
  AGGGAAAAAA AAAAAAAAGT TACCTACCCA AGTTCTCCAC TCGGCTTCTT TTAAGACCCC
  CCACAGTGGT GCAGGCAGTT GGTAGATGCT CGCAAGACCC CTTCTCGGAA AATCGGGGGC
  TAAGCTTGTA CTTAGATGTA CAAGGTGTAG AATTCTCATC TGCACAAGGC TCTAAGTACC
  ATTCCAGCAT TCTCAAATTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCACACACAC
  W
  CACACACACA CACACACACA CACACACACA CACACACACA CCAGGAGAGA AATAGCTGTT
  AATTTGAAGG TCTGACTCAG CTCACTGTCA GAACACGTAC TTGCCTAGCA AACTGCAGGC
  CCCTCCATCC AGCAGTGTAA GTGGAGGAGA GAAGAGAGAA GGCTCCAAGT AAAGAGCATT
  TGCTGCTCCT GCAGAGGCCC GGGTTCTGTT CCCAGCACCC ACAATGGTGA CCTACAGCTG
  CCTGTAACCT CAGCTACAGG GGTGTCCGAT ACCTTCTTCT GGCCTCCATG ACACACAGAC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45374588	mCV25281620	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss148266321	ENSMUSSNP5752103	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs29906005					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167960458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12763	CpG island 12763	584 bp distal
Gm52960	predicted gene, 52960	within coordinates
Rr570896	regulatory region 570896	374 bp distal
Rr570897	regulatory region 570897	1208 bp distal
Rr570898	regulatory region 570898	597 bp proximal
Tssr27826	transcription start site region 27826	632 bp downstream