rs29887539 SNP Detail

Summary

• ID
  rs29887539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:33165083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAATTGA CCCTGCAGTA
  AAAGCTGCCA ACTAATGGGT CAGTAGTTCC AGATGGCAAA GGTTTTGGTT CAGTGACTGC
  CAGATGGACA ACGCTAAGAA GCAACAACTA TAGAAGTTTT CCTGTCCTGG TTTAAGCCCC
  TCTTGGAAAG CCAAGGTCAA GGAACTTAGG GCTTACTGTA AGAAAAGGTG TAACTGAACG
  Y
  TGTAAGGCAA CAGATGGCAA GAGCTCCTTG CTAGCTACTG GGAAAGTCTG TACTCTTCCG
  AGGGCCTAGT CTTCTGTGTA GTAATGAACA TGGTTATTTT CCTCTTTTCT CTAGATAACA
  CTCCTGCTGG ACCTCTATTA ACCACATCAT TCCTTTCAAA AGTTTGCCAG GAAATACCCA
  GTACAGATGA AGAGGCGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46352590	mCV23087586	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss136263368	ENSMUSSNP4665342	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29887539					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:33165083 () rs orientation: forward

Symbol	Name	Function Class
Gm32171	predicted gene, 32171	675 bp upstream
Gm69331	predicted gene, 69331	within coordinates