rs29885128 SNP Detail

Summary

• ID
  rs29885128
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:92489697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAT CCCCTCTGCC TTCTGGGGAA
  S
  CCAGCAGCTG AGAATACTTA GTCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39128701	mCV23769142	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
ss144934165	ENSMUSSNP1218775	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss324480474	CHEV_13_93123144	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29885128					SNP	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92489697 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dhfr	dihydrofolate reductase			1594 bp upstream
Msh3	mutS homolog 3			Intron
				Noncoding-Transcript-Variant
Rr403896	regulatory region 403896			1311 bp upstream
Rr483661	regulatory region 483661			1047 bp proximal
Rr483662	regulatory region 483662			1328 bp proximal
Rr483663	regulatory region 483663			1478 bp proximal
Rr483664	regulatory region 483664			1786 bp proximal
Tssr120622	transcription start site region 120622			1559 bp upstream
Tssr120623	transcription start site region 120623			1950 bp upstream
Tssr120624	transcription start site region 120624			1997 bp upstream
Tssr123429	transcription start site region 123429			1314 bp downstream
Tssr123430	transcription start site region 123430			1754 bp downstream