rs29869140 SNP Detail

Summary

• ID
  rs29869140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108806795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACTTGAAG GATGATTTCT TAGGCGCAGA GTTGACTGAC
  ACCGTCATTG CTTGGTACCA TCGTAAACAC CAGTGGGGTG ATGGTGCTGT CAGAAGGTCA
  R
  CTAGTCCTCG CAGCCCACTA GCCACGTATG GGAAGGTGGA GTTCCGGGGT TACTCGAGTG
  GACTTCAAAG TCCAAGACAG CAGGACACCC AGCCAAGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45871891	mCV24063472	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss133510103	ENSMUSSNP4442494	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29869140					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108806795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17816	CpG island 17816			193 bp distal
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417			1558 bp upstream
Rr399823	regulatory region 399823			1197 bp downstream
Rr636213	regulatory region 636213			1491 bp distal
Rr636214	regulatory region 636214			1150 bp distal
Rr636215	regulatory region 636215			664 bp distal
Rr636216	regulatory region 636216			1936 bp proximal
Tssr58099	transcription start site region 58099			1317 bp downstream
Tssr58100	transcription start site region 58100			1292 bp downstream
Tssr58101	transcription start site region 58101			1276 bp downstream
Tssr58102	transcription start site region 58102			1269 bp downstream
Tssr58103	transcription start site region 58103			1230 bp downstream
Tssr58104	transcription start site region 58104			1218 bp downstream
Tssr58105	transcription start site region 58105			1113 bp downstream
Tssr58106	transcription start site region 58106			1090 bp downstream
Tssr58107	transcription start site region 58107			690 bp downstream
Tssr62395	transcription start site region 62395			1450 bp upstream