rs29861566 SNP Detail

Summary

• ID
  rs29861566
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120806725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA GTCTGAAGAG GGTGACTGTG
  W
  ACTCACATAC ATAAAATCAA CATGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss45370218	mCV22579020	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss147374590	ENSMUSSNP2492746	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs29861566					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120806725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	698 bp proximal
Gm55820	predicted gene, 55820	1407 bp downstream
Rr563749	regulatory region 563749	242 bp distal
Rr563750	regulatory region 563750	19 bp distal
Rr563751	regulatory region 563751	271 bp proximal
Rr563752	regulatory region 563752	283 bp proximal
Rr563753	regulatory region 563753	793 bp proximal
Rr563754	regulatory region 563754	799 bp proximal
Rr563755	regulatory region 563755	865 bp proximal
Rr563756	regulatory region 563756	1247 bp proximal
Tmem62	transmembrane protein 62	773 bp upstream
Tssr19722	transcription start site region 19722	837 bp upstream
Tssr19723	transcription start site region 19723	904 bp upstream
Tssr19724	transcription start site region 19724	1004 bp upstream