rs29860145 SNP Detail

Summary

• ID
  rs29860145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94235463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAAATAGC TGTGGCCAGA AACAATATAG CGAAGGAGCC
  AATGGGAGAA GGGCTCCCCA AATTGCAGCA TAAGTGACTG AATTCAATGC CTCCCTTCAC
  R
  CGGACCTCAG CAAACCACCA ACAGCAATCA AAAGATGAAA ACAGGGATGG TGCAGGATTT
  CCAATCTTAC GTTGGAAAGG CAGCCTTACT GTATTTTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45370786	mCV25142666	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss146954207	ENSMUSSNP1418241	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29860145					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94235463 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810002D19Rik	RIKEN cDNA 2810002D19 gene			1589 bp upstream
Cpgi11962	CpG island 11962			896 bp proximal
Rr561373	regulatory region 561373			543 bp proximal
Rr561374	regulatory region 561374			1014 bp proximal
Rr561375	regulatory region 561375			1359 bp proximal
Rr561376	regulatory region 561376			1551 bp proximal
Rr561377	regulatory region 561377			1584 bp proximal
Rr561378	regulatory region 561378			1638 bp proximal
Tssr19003	transcription start site region 19003			1601 bp upstream
Tssr19004	transcription start site region 19004			1645 bp upstream
Tssr25328	transcription start site region 25328			116 bp upstream
Tssr25329	transcription start site region 25329			1529 bp downstream
Ttc17	tetratricopeptide repeat domain 17			Intron
				mRNA-UTR