rs29858604 SNP Detail

Summary

• ID
  rs29858604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32450207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACAGAGA AACCCTGTCT
  CGAAAAACCA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAT TAGAAAGCAA ACTATTCCCA
  GCATAAAATT CCCTGACCAA GTATTATCTA TTAATATCAC ACAGGAAGCA CAATTTAAGT
  AATGATGCTT TTAGGACCTA AGATTAACTA TGAAATTCAA GGTTATTTAA CTCCTCGACC
  R
  GGGATAAGGG TGTTCTGAAA CTGCCGGACA CGACTAGTTA AATATTTTAA AACTCAGATT
  CCCTGGAATG TGAGATTAAA ACGAGGCCTT AGGGTGGAAA AGAAAGAAAA CAGGAAATAC
  AGACAGTCCA GTAAAACACA GAGGAATGAA TCCTTAAGAC GAGGTTGAGG ACGCGTGGCA
  GTTTTGAGTG TATTTCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49576420	NES12853566	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29858604					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576420	NES12853566	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32450207 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13056	CpG island 13056	629 bp proximal
Gm56797	predicted gene, 56797	1007 bp upstream
Gm65709	predicted gene, 65709	within coordinates
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	996 bp upstream
Rr397633	regulatory region 397633	794 bp upstream
Rr574951	regulatory region 574951	1668 bp distal
Rr574952	regulatory region 574952	within coordinates
Rr574953	regulatory region 574953	606 bp proximal
Rr574954	regulatory region 574954	1123 bp proximal
Rr574955	regulatory region 574955	1333 bp proximal
Rr574956	regulatory region 574956	1624 bp proximal
Tssr28746	transcription start site region 28746	968 bp upstream
Tssr28747	transcription start site region 28747	1049 bp upstream
Tssr28748	transcription start site region 28748	1092 bp upstream
Tssr28749	transcription start site region 28749	1180 bp upstream
Tssr28750	transcription start site region 28750	1210 bp upstream