rs29843030 SNP Detail

Summary

• ID
  rs29843030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:110159230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATTCTGGA CTGTAGTTCA CTCCAGATAT AGTCTAGTTG
  ATGATAGCCA GGAATAGTCA CTACACTCAT TTTTACACAT TCTTGATGTA GGCACACCAC
  Y
  TACAGCTACA AGTCTATGTT TCCCTCACAG GACCTCCCCC GCCCCCCACT ACTGAATTAT
  GTGGCACAGT TCTTGTCCCT TCTCTGACAG TTGTAACTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46886723	NES10698362	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29843030					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886723	NES10698362	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110159230 () rs orientation: forward

Symbol	Name	Function Class
C130013H08Rik	RIKEN cDNA C130013H08 gene	within coordinates
Prmt6	protein arginine N-methyltransferase 6	916 bp upstream
Rr397950	regulatory region 397950	738 bp downstream
Rr583471	regulatory region 583471	1889 bp distal
Rr583472	regulatory region 583472	1288 bp distal
Rr583473	regulatory region 583473	817 bp distal
Rr583474	regulatory region 583474	192 bp distal
Tssr31306	transcription start site region 31306	1736 bp downstream
Tssr31307	transcription start site region 31307	1710 bp downstream
Tssr35241	transcription start site region 35241	899 bp upstream
Tssr35242	transcription start site region 35242	533 bp upstream