rs29832153 SNP Detail

Summary

• ID
  rs29832153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118943161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGC CGGATCAGAA CAATCATAAA
  R
  GAAGGGAAGA GTGACCCTAC GAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45368677	mCV23833190	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147323372	ENSMUSSNP7164269	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29832153					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118943161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	within coordinates
Gm57476	predicted gene, 57476	within coordinates
Rad51	RAD51 recombinase	134 bp upstream
Rr563414	regulatory region 563414	1130 bp distal
Rr563415	regulatory region 563415	939 bp distal
Rr563416	regulatory region 563416	within coordinates
Rr563417	regulatory region 563417	140 bp proximal
Tssr19603	transcription start site region 19603	129 bp upstream
Tssr25799	transcription start site region 25799	68 bp downstream