rs29816584 SNP Detail

Summary

• ID
  rs29816584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172390091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGCCTTC CAGAGAGAGC
  CTGGGACCTG GCGTTCCCAG TCCTGAGCTT GATGCGGGCA GCACCAGTTC TTTCTGGAGC
  AGGTGCCCTC TTCTCCCGCT AATTCCAGGG CCTCTGTTTT GGAGGCTCGG TCTGGATTGC
  CTGCCTTTTT AACTTAGCCG GAAAAGCCCC CTTGATTCCC GCGGTTTCAA CTTCCTGGGT
  Y
  TGTTAGGGTC AACTGGCCAG AAAGCTATTT TGCATGCGGC TATTCTCTAA GACCATGGGG
  GAACGGTTGG CTTGAACATC TATTTTAATT TTAGTTACTT TACTTCAGGC CTATCTGGGT
  CTAGGGAAAT GCTTACAGAC GAGGAGCAGG AAGAGAGCAA ATTATTTTAG TCTGTGGATA
  CGGGAGGCAC GTTCCCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45364784	mCV23507047	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148318878	ENSMUSSNP7246332	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320619377	CHEV_2_172373671	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29816584					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172390091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12823	CpG island 12823	220 bp distal
Cpgi12824	CpG island 12824	516 bp proximal
Cpgi12825	CpG island 12825	1088 bp proximal
Rr571697	regulatory region 571697	932 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21963	transcription start site region 21963	1972 bp downstream
Tssr21964	transcription start site region 21964	1947 bp downstream
Tssr21965	transcription start site region 21965	1939 bp downstream
Tssr21966	transcription start site region 21966	1410 bp upstream
Tssr21967	transcription start site region 21967	1465 bp upstream