rs29780201 SNP Detail

Summary

• ID
  rs29780201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112356627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG GAGGGTCTGT CCATCTGCTG
  R
  CAGGAACCAG TAGGGACTAG GCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45861368	mCV23097010	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss149079282	ENSMUSSNP2827532	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29780201					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112356627 () rs orientation: forward

Symbol	Name	Function Class
1700028D13Rik	RIKEN cDNA 1700028D13 gene	within coordinates
Rr617281	regulatory region 617281	1954 bp distal
Rr617282	regulatory region 617282	1603 bp distal
Rr617283	regulatory region 617283	1263 bp proximal
Rr617284	regulatory region 617284	1530 bp proximal
Tssr47952	transcription start site region 47952	1980 bp downstream
Tssr47953	transcription start site region 47953	1968 bp downstream