rs29773818 SNP Detail

Summary

• ID
  rs29773818
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120807592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGG TCAGGGATGC CAGACCCTGG
  W
  GGAGCCAGGT GGCGAGCTGC CTCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45363489	mCV22579032	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss147374598	ENSMUSSNP3534968	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320480954	CHEV_2_120802847	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29773818					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120807592 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12148	CpG island 12148			within coordinates
Gm55820	predicted gene, 55820			540 bp downstream
Rr397244	regulatory region 397244			1466 bp upstream
Rr563749	regulatory region 563749			1109 bp distal
Rr563750	regulatory region 563750			886 bp distal
Rr563751	regulatory region 563751			575 bp distal
Rr563752	regulatory region 563752			84 bp distal
Rr563753	regulatory region 563753			53 bp distal
Rr563754	regulatory region 563754			within coordinates
Rr563755	regulatory region 563755			within coordinates
Rr563756	regulatory region 563756			380 bp proximal
Rr563757	regulatory region 563757			1639 bp proximal
Tmem62	transmembrane protein 62			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr19722	transcription start site region 19722			4 bp downstream
Tssr19723	transcription start site region 19723			37 bp upstream
Tssr19724	transcription start site region 19724			137 bp upstream