rs29769890 SNP Detail

Summary

• ID
  rs29769890
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172392439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAACTGC AACCTGGTTT
  TCAAGAGAAG TGGGGGTTGG GGACTGTGGG GTGGGGGTGA AGCCAGATGG GGCCTTGAGC
  GCTCGCGAGT ACTCTAGCCT GTCGGACAGG TTGAGCTAGA GTTTCGGAGA GTAGGAGGGA
  GGGAGGCGGC GAGCGGGAAG AGGAAGAAGA TTCAGGCGGC GCGAGGCGAG CACCGGGGAA
  M
  GTGGGGAGGA GAGGCCGGCG GCCAGGCTGC GGGAGCGCAC CGCACCCGCA CGACCTCGAG
  GGGCTGCCCC TGCGTGCATG CCCGGGCGGC TTCCGCTAGG GGGCGACAGT GCCCCGCTCC
  TGTGTCCCTG CTACCCTTCT GACCCCTGGG ACTGATGAAG ACACATCTTT TAGGAATTAA
  GTCTGACCGC CTTGGGGCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45361935	mCV23507373	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss148318933	ENSMUSSNP1529066	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29769890					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172392439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12824	CpG island 12824			1517 bp distal
Cpgi12825	CpG island 12825			within coordinates
Rr571697	regulatory region 571697			916 bp distal
Rr571698	regulatory region 571698			within coordinates
Rr571699	regulatory region 571699			89 bp proximal
Tfap2c	transcription factor AP-2, gamma			Intron
				mRNA-UTR
Tssr21966	transcription start site region 21966			914 bp downstream
Tssr21967	transcription start site region 21967			870 bp downstream
Tssr21968	transcription start site region 21968			242 bp upstream
Tssr21969	transcription start site region 21969			509 bp upstream
Tssr21970	transcription start site region 21970			984 bp upstream
Tssr21971	transcription start site region 21971			1003 bp upstream
Tssr27948	transcription start site region 27948			416 bp downstream