rs29749198 SNP Detail

Summary

• ID
  rs29749198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:29504072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTCAACT TGCTATTGGA
  AAATTATTGT ACTTTAATAT AAAAGAGAAA TATGTCTCTG GTTCCATTTT ATTGTTGTTG
  TTGTACTTTA TCATTTAAAA ACTTTAAAAT TGATCATTTT TTCCATCTCC GATGCTTTTC
  CAAATCATCT TCCCATCCCT GACCACCCCA CTTTAAGTTC CTTCACAAAA CTCCAGTGGA
  R
  CAATAAAACT CCCAAGCAAT GAAAACAAAA TAAAACTGCA CCAAAAAAAC CCAAAAAAAC
  AAAAAACAAA GACCTGTAAC CAAATAAAAG AACATGCACA CACACACACA CACACAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAAGGAGG AGGAGGAGGA GGAGGACGAG GAAGAAGAAG
  AAGAAGAAGA AGAAGAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46879348	NES10814881	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29749198					SNP	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46879348	NES10814881	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29504072 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egfem1	EGF-like and EMI domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr574669	regulatory region 574669			680 bp distal