rs29748306 SNP Detail

Summary

• ID
  rs29748306
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:29500823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATTTAAA AAACTGCTAT
  CGATAAGCAT TCAGAGACAG CACTCTTTAA ATGTAAAATG AAATCAAAAG ATTCTCTTTT
  GTTTAACCTC AGAAATACTT AAAAGAGTTT TTCAGAGTGG GTAGAGAAGT GATACTGTTT
  GGATAGAAAA CATGTTCATA TCAAAAGATA GTGAGGAGGC ACTAGGGCAG AGACTGATGG
  K
  TAAAGTGCTC CGTGCTGGGT CCTGATCCCC AACTCTCTTG AAAACAACAC CACCAACAAA
  AACACCACCA CCAACAACTG CAAAACATAC AAACAGCAAC CAAAACCAAA AGATATAGTC
  CTCTGCAGCC ATAATCCTAG TGGTGGAGCT CGGGGCTCAT TGGCCAGCCA GGTCAGCCAA
  ATCCAGGGTT CCAAGCTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46879336	NES10815079	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29748306					SNP	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46879336	NES10815079	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29500823 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egfem1	EGF-like and EMI domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr574669	regulatory region 574669			1990 bp proximal