rs29745085 SNP Detail

Summary

• ID
  rs29745085
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:114139953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG TCTGCAGCAG GTGAAGTGAC
  M
  GTGACGCAGA CAGGACTGAG CTCAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46338026	mCV23884174	ABI	CRAMUS_MOUSE	f	SNP	C	C	A					C		C
ss52042998	NES15057582	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A		A	C	A	C	A	C	C	A	C
ss136993181	ENSMUSSNP3871661	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29745085					SNP	C	C	A	C	A	C	A	C	A	C	A	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52042998	NES15057582	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114139953 () rs orientation: forward

Symbol	Name	Function Class
4921528I07Rik	RIKEN cDNA 4921528I07 gene	Intron
Rr383946	regulatory region 383946	429 bp upstream