rs29721180 SNP Detail

Summary

• ID
  rs29721180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172392448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTGGTT TTCAAGAGAA
  GTGGGGGTTG GGGACTGTGG GGTGGGGGTG AAGCCAGATG GGGCCTTGAG CGCTCGCGAG
  TACTCTAGCC TGTCGGACAG GTTGAGCTAG AGTTTCGGAG AGTAGGAGGG AGGGAGGCGG
  CGAGCGGGAA GAGGAAGAAG ATTCAGGCGG CGCGAGGCGA GCACCGGGGA ACGTGGGGAG
  R
  AGAGGCCGGC GGCCAGGCTG CGGGAGCGCA CCGCACCCGC ACGACCTCGA GGGGCTGCCC
  CTGCGTGCAT GCCCGGGCGG CTTCCGCTAG GGGGCGACAG TGCCCCGCTC CTGTGTCCCT
  GCTACCCTTC TGACCCCTGG GACTGATGAA GACACATCTT TTAGGAATTA AGTCTGACCG
  CCTTGGGGCG AGGGGACGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45357925	mCV23507374	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29721180					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172392448 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12824	CpG island 12824			1526 bp distal
Cpgi12825	CpG island 12825			within coordinates
Rr571697	regulatory region 571697			925 bp distal
Rr571698	regulatory region 571698			within coordinates
Rr571699	regulatory region 571699			80 bp proximal
Tfap2c	transcription factor AP-2, gamma			Intron
				mRNA-UTR
Tssr21966	transcription start site region 21966			923 bp downstream
Tssr21967	transcription start site region 21967			879 bp downstream
Tssr21968	transcription start site region 21968			233 bp upstream
Tssr21969	transcription start site region 21969			500 bp upstream
Tssr21970	transcription start site region 21970			975 bp upstream
Tssr21971	transcription start site region 21971			994 bp upstream
Tssr27948	transcription start site region 27948			407 bp downstream