rs29719178 SNP Detail

Summary

• ID
  rs29719178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172391285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGGAACAG CTGGGGCGAG
  GTGTCAGGGA ACCCCAGGAG TTGAGACACC CTGGAATGGG GCGTCTTCAA CTCTCAAGTG
  ACATCCATTT TTTAGGAGGA TGAAGGACGG TTCTTGAGGT GGGGAAATCC CAGCTGTCAG
  CTCTGCCAGT CTAAGGTGTG CAAGGGGGCT GGCAGGCAAA GGAAGCCACG TTTGGGCACC
  Y
  CAGCTTGGCA GGTCTGCGGT TGTCAGAGAC CGCCCACTGA TGCCCCTGCG AGCCCCTCGC
  GACGCCTGGT CCTGCAACAC GCTAGGCAGG GTGCGGGGCG GAGCTAGGCA GGGACTGGCT
  GGGGGCTGCC CCGCCCGGCG CCTGGGCCTC CGCGCGGCGC CGGCCCCCGG GGAGGAGTTA
  TGATAATTTC CTTCCCATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45356819	mCV23507365	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss148318927	ENSMUSSNP3567806	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320619387	CHEV_2_172374865	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29719178					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172391285 () rs orientation: forward

Symbol	Name	Function Class
Rr571697	regulatory region 571697	within coordinates
Rr571698	regulatory region 571698	927 bp proximal
Rr571699	regulatory region 571699	1243 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	216 bp upstream
Tssr21967	transcription start site region 21967	271 bp upstream
Tssr21968	transcription start site region 21968	1396 bp upstream
Tssr21969	transcription start site region 21969	1663 bp upstream
Tssr27948	transcription start site region 27948	1570 bp downstream