rs29713698 SNP Detail

Summary

• ID
  rs29713698
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50545874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGACTCA GCGTGGACAG
  AACACATTGT CCACCTCCAA ACAACAGACT CCTTGTGGCC CCGCCCCCCG TTCCATGTTT
  TGATTGAGGA GGAGGAAATT TTAGTAGAAG CTTTAAATAG CATATATTAT ATATTTTAAG
  AAAAACTAAA GGGCCTAGGT TCCTACTCTC ATTTTTGCAA GGTGAATGAA TCTCTCAGAA
  K
  GTCTAAAACC ATCCCAGGGA AACGGAAACG TTAAGAAGAT AGGATTTTTC CAGACATTGG
  CGCATGTCTT CAATCCCAAA ATTAAGGAGG CAGAAGCAGG CAGATCTCTG TGAGTTCTAG
  GACAGCCAGG AGTAGAAAGA AAGTTCCAGG GCAGCCAAGG CTGTTACACA GAGAAACCCT
  GTCTTAAAAA AAAAAAATCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47873408	NES11680408	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29713698					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873408	NES11680408	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50545874 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cpgi17392	CpG island 17392	1827 bp distal
Rr630036	regulatory region 630036	1334 bp distal
Rr630037	regulatory region 630037	1804 bp distal