rs29713696 SNP Detail

Summary

• ID
  rs29713696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50545705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCACGT ACAGGGAATA
  AGTGGATCGG ATGCTTTAGA TTGAAGTGCA GCAGCATTAC CTAGGCATTC CTGCCAGAGC
  TGCCCCAAGC CACCTTCTCT GAGCTAGGCT TTTCATTTGC TGAGCTTCTA GTACAGCCAG
  AGATGGTTTC CTTTCAGTCC ATAGCCAGCC CTAGACTCAG CGTGGACAGA ACACATTGTC
  Y
  ACCTCCAAAC AACAGACTCC TTGTGGCCCC GCCCCCCGTT CCATGTTTTG ATTGAGGAGG
  AGGAAATTTT AGTAGAAGCT TTAAATAGCA TATATTATAT ATTTTAAGAA AAACTAAAGG
  GCCTAGGTTC CTACTCTCAT TTTTGCAAGG TGAATGAATC TCTCAGAAGG TCTAAAACCA
  TCCCAGGGAA ACGGAAACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47873406	NES11680407	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29713696					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873406	NES11680407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50545705 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cpgi17392	CpG island 17392	1658 bp distal
Rr630034	regulatory region 630034	1963 bp distal
Rr630036	regulatory region 630036	1165 bp distal
Rr630037	regulatory region 630037	1635 bp distal
Tssr56423	transcription start site region 56423	1975 bp downstream