rs29712588 SNP Detail

Summary

• ID
  rs29712588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50545028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGATATGG GAACCATAGA
  TAAGGAGGTC TGATGTATTT TCATTGTTAT TAAACTGTCC TAGCTTTTGG GGGTACTCGT
  TCAGCATTTA GACTTAGTCC TTATGTAGGT TTATTTTAAG TTATTTGTAT ATAGGCTTAT
  TTATCAAACT CTTAAAGTTT TTAAAGACCT GATGTAGCAA ATCTGTAGAC ATTCAATATG
  Y
  CCTTAAATCA AGTCCTGATA CTGCCTTCCT TATTTCTCCA AAGAAAAAGT AGTTCTTACT
  GAAGTCATTG TTCTCTCAAT ATCGTTTCTT TGTGGAACAG AAGATACCAT TTTTCGTTTA
  TAAACGAGTT GGCTGTGAGT TGCTCTTGTT TGTGTTTTAT GTGTGTATGT GGGGGAGGGG
  AGTGTTTGGT TTTGGCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47873398	NES11680466	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	T	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29712588					SNP	C	T	T	T	C	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873398	NES11680466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50545028 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cpgi17392	CpG island 17392	981 bp distal
Cycs	cytochrome c, somatic	1510 bp upstream
Rr630033	regulatory region 630033	1521 bp distal
Rr630034	regulatory region 630034	1286 bp distal
Rr630035	regulatory region 630035	1469 bp distal
Rr630036	regulatory region 630036	488 bp distal
Rr630037	regulatory region 630037	958 bp distal
Tssr56423	transcription start site region 56423	1298 bp downstream
Tssr60918	transcription start site region 60918	1490 bp upstream
Tssr60919	transcription start site region 60919	1471 bp upstream