rs29711995 SNP Detail

Summary

• ID
  rs29711995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50482093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTGAA TGTAGAGATA
  AGCAACGGAC TCACTGTTGG ACTCAGTGGC TTTAAGGTAG CAGAGCCTCT GAGGAGGGAA
  GGAGCTAGAT AAAGGAGTGG GCGTACAGGG ACAAAAGCCC AAGGGGAAAT TTTCATCTGT
  TCGTTTATTT ACTACATTCA CTTATTGTTT TGCAGAGGGA AATATGGTTT TTACAATTTC
  Y
  AACCATCTGT CTTTTGCTGG GAGTGGGAGG CAGAACCAGC TTCGGCTGGG CCTGAGGAAG
  GAGGGAGGGA GACTTCGGAA CCCGAGCTGA TCGTGGTGGG GGAGAAGGAG CGAGAGAAAG
  AGAGAGGAAG AGGTTAAAGG TCCGTCCATT GAGAAAAATT AAATAGAATT ATGGAATGTG
  CAGGAAATGA ATGGAACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47872922	NES11684092	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29711995					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47872922	NES11684092	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50482093 () rs orientation: forward

Symbol	Name	Function Class
Gm40372	predicted gene, 40372	within coordinates
Rr630019	regulatory region 630019	61 bp distal
Tssr60917	transcription start site region 60917	608 bp downstream