rs29711618 SNP Detail

Summary

• ID
  rs29711618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50544005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTAGGAC TCCTTCGGCC
  TCCGCCCACG GGGAGTGCTG AGACTGCCGG CCGGTGTGCT GGCGACCTTT ACCCAGGCTT
  GGTCAAGGCT TCCTGGCTGG CGCAACTGCA CTGGCCTCGC AGTGGACGCC TGCTGGTGAC
  CTTTACTCTG TTAAACCATC TTCCTGCTCT CCCAGTGAGA GCCTCAAAGC TGGGGAAGGT
  R
  CGCACAAGTG GCAGACAGGA TCACATCTTA CCCAGAGTCC CTGTTTTCTT CCCCTAGTGT
  TTGTAGAAAA CGAGGAGGGT GTGCAGGCAA GCTTTAAGGG AGAAGCAGGA TTCGCCTGAG
  TAGAGGATTC CCGGGAATCC GCTAGACTTG GCATCCCTTC TGACCATATT GGAAATGGAA
  GTCTCCTTAG CATACTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47873388	NES11680606	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	A	A	A	G		A	G	G	G
ss133182258	ENSMUSSNP1758964	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29711618					SNP	G	G	A	A	A	G	A	G	A	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873388	NES11680606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50544005 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cpgi17392	CpG island 17392	within coordinates
Cycs	cytochrome c, somatic	487 bp upstream
Rr630033	regulatory region 630033	498 bp distal
Rr630034	regulatory region 630034	263 bp distal
Rr630035	regulatory region 630035	446 bp distal
Rr630036	regulatory region 630036	within coordinates
Rr630037	regulatory region 630037	44 bp proximal
Tssr56423	transcription start site region 56423	275 bp downstream
Tssr60918	transcription start site region 60918	467 bp upstream
Tssr60919	transcription start site region 60919	448 bp upstream