rs29711614 SNP Detail

Summary

• ID
  rs29711614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50543849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAGGCC TCGTTTGCCC
  GACACTTACG ACAGGCCTTA GGACGTAAGG CGTGGACGTG CGTGACGTCA CCCTCTGGCC
  TGCGAGATGG CGAGGGCAAG TAGCGGGGCC GATGCTCCCT TGGGATCCGG GTGTGGCTCG
  GCTCAGGTAA CGCCCGGCCC TAGGACTCCT TCGGCCTCCG CCCACGGGGA GTGCTGAGAC
  Y
  GCCGGCCGGT GTGCTGGCGA CCTTTACCCA GGCTTGGTCA AGGCTTCCTG GCTGGCGCAA
  CTGCACTGGC CTCGCAGTGG ACGCCTGCTG GTGACCTTTA CTCTGTTAAA CCATCTTCCT
  GCTCTCCCAG TGAGAGCCTC AAAGCTGGGG AAGGTACGCA CAAGTGGCAG ACAGGATCAC
  ATCTTACCCA GAGTCCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45889893	mCV24540064	ABI	CRAMUS_MOUSE	f	SNP		C	T					T	T
ss47873384	NES11680604	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29711614					SNP	C	C	T	T	T	C	T	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873384	NES11680604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50543849 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cpgi17392	CpG island 17392	within coordinates
Cycs	cytochrome c, somatic	331 bp upstream
Rr630033	regulatory region 630033	342 bp distal
Rr630034	regulatory region 630034	107 bp distal
Rr630035	regulatory region 630035	290 bp distal
Rr630036	regulatory region 630036	within coordinates
Rr630037	regulatory region 630037	200 bp proximal
Tssr56423	transcription start site region 56423	119 bp downstream
Tssr60918	transcription start site region 60918	311 bp upstream
Tssr60919	transcription start site region 60919	292 bp upstream